DOI: 10.1111/2041-210x.12410 ISSN:
popart : full‐feature software for haplotype network construction
Jessica W. Leigh, David Bryant - Ecological Modeling
- Ecology, Evolution, Behavior and Systematics
Summary
Haplotype networks are an intuitive method for visualising relationships between individual genotypes at the population level.
Here, we present
popart
, an integrated software package that provides a comprehensive implementation of haplotype network methods, phylogeographic visualisation tools and standard statistical tests, together with publication‐ready figure production.
popart
also provides a platform for the implementation and distribution of new network‐based methods – we describe one such new method, integer neighbour‐joining.
The software is open source and freely available for all major operating systems.