Strategic Optimization of Agricultural Supply Chains Based on the Integration of GIS and Multimodal Infrastructure Capacity in Kazakhstan

Background: Managing agrologistics supply chains under infrastructure scarcity requires integrative, spatially explicit decision-support tools. This study develops a macro-level digital twin of the multimodal agricultural supply chain in Kazakhstan’s Almaty region to optimize freight allocation and guide strategic investment planning. Methods: Our methodology integrates Earth observation data (ESA WorldCover 10 m) with a large-scale multimodal road–rail graph network (1.39 million nodes) to identify 135 crop production clusters. Using linear programming in MATLAB, we optimize the regional distribution of 322.2 thousand tons of seasonal maize, wheat, and soybeans while localizing new storage silos using Green Field Analysis. Results: The baseline simulation reveals a critical storage capacity deficit, yielding a Capacity Coverage Ratio of only 23.8%. However, implementing optimal multimodal rail-road routing mathematically reduces the Logistics Cost Index from 8,642,195 to 4,716,175 units, achieving overall cost savings of 45.4%. Conclusions: The proposed digital twin and its performance metrics provide a scientifically grounded, data-driven toolkit for public–private partnerships, ensuring robust infrastructure investment localization and facilitating the transition toward the Agriculture 4.0 paradigm.