Sheeppox and Goatpox: Molecular Epidemiology, Phylogeny and Transmission Patterns

Sheep- and goatpox are highly contagious, transboundary viral diseases caused by capripoxviruses (CaPV), severely impacting small ruminant production and resulting in significant economic losses. Our study aimed to analyze the spatiotemporal SGP distribution using the available genome sequence data and to evaluate the recombination occurrence. For this, the WAHIS, WOAH and FAO databases were utilized for the epidemiological analysis of SGP outbreaks. The cross-correlation was calculated to assess the impact of massive animal movements associated with the Islamic holiday of Eid al-Adha on the SGP epizootic situation, and phylodynamic and phylogeographic analysis, as well as a recombination analysis were performed. A total of 1629 SGP outbreaks were reported to WAHIS during 2010–2024, with the majority occurring in Mongolia, the Balkan countries, Russia and the Middle East. Over 60% of all SGP outbreaks were associated with croplands or grasslands, with the highest proportion corresponding to animal densities of 10–50 head/km2. Statistically significant positive cross-correlation (p < 0.05) was identified between the month of the Eid al-Adha celebration and the number of SGP outbreaks in Russia, Mongolia, Bulgaria and Tajikistan, while in Greece and China no significant correlation was found. The inferred goat pox virus (GTPV) transmission pathways from China to Vietnam and from India to Bangladesh; for the sheeppox virus SPPV, the routes between Kazakhstan and Russia, Kazakhstan and India, as well as between Russia and China, had the strongest Bayes factor support. Intra-specific recombination events were not detected for the SSPV and GTPV datasets. However, inter-specific CaPV recombination analysis identified a single recombination event in GTPV. Therefore, the use of molecular epidemiological tools, along with the time-calibrated phylodynamic and phylogeographic analyses, has significant applications in the local and international surveillance of the occurrence of SGP outbreaks and for identification of potential recombination events.