Sedimentary DNA and Fossil Archives Reveal Long‐Term Phytoplankton Shifts and Their Biogeochemical Influence in a Subtropical Lake

ABSTRACT

Understanding long‐term phytoplankton community dynamics is essential for assessing ecological resilience and informing lake management under global change. However, centennial‐scale patterns of phytoplankton dynamics remain poorly resolved due to the limited taxonomic resolution of traditional fossil‐based paleoecological approaches. In this study, a combination of sedimentary DNA (sedDNA) and subfossil diatom analysis was used to investigate changes in the phytoplankton community over the past two centuries and associated sedimentary biogeochemical responses in Lake Xiliang, a subtropical lake in the Yangtze River Basin, China. The sedDNA data captured major shifts in both eukaryotic and cyanobacterial communities, revealing distinct ecological phases linked to human activities and regional climate warming. Under near‐natural conditions with minimal human disturbance, phytoplankton communities typically exhibit low diversity and are characterized by oligotrophic taxa such as xanthophytes and Gyrosigma . After the 1930s, increases in epiphytic Staurosira and declines in tychoplanktonic Aulacoseira suggest reduced river–lake connectivity and weaker water‐column turbulence following the construction of the Jinshui Sluice, likely facilitating macrophyte expansion. In recent decades, intensified anthropogenic pressures combined with regional warming have driven a shift toward more diverse phytoplankton assemblages enriched in cyanobacteria, reflecting elevated nutrient inputs and rising temperatures. The observed associations between phytoplankton community changes and sedimentary geochemical proxies suggest that phytoplankton dynamics may not only have responded to environmental change but also contributed to sedimentary biogeochemical cycling, particularly total organic carbon accumulation and calcium‐related processes such as photosynthesis‐induced carbonate precipitation. These findings illustrate long‐term phytoplankton community dynamics and underscore the value of sedDNA for reconstructing ecological trajectories in lake ecosystems.