DOI: 10.1126/sciadv.aeh5849 ISSN: 2375-2548

Mechanism of GPR84 allosteric modulation at a helix 8–proximate site

Xuan Zhang, Abdul-Akim Guseinov, Laura Jenkins, Jingkai Zhou, Fabian Gossen, Pinqi Wang, Zobaer Al Mahmud, Yueming Li, Andhika B. Mahardhika, Christa E. Müller, Mingye Feng, Angela J. Russell, Irina G. Tikhonova, Graeme Milligan, Cheng Zhang

Allosteric modulators offer opportunities for pathway-selective G protein–coupled receptor (GPCR) signaling, but the mechanisms enabling biased allosteric modulation remain poorly understood. We identify a helix 8–proximate allosteric site in the immune-metabolic receptor GPR84 and define how it achieves G i -biased signaling. Cryo–electron microscopy structures of the GPR84-G i complexes bound to the orthosteric agonist OX04539 alone or with the positive allosteric modulator PSB-16671 reveal a helix 8–proximate allosteric site for PSB-16671 formed between transmembrane helices 1 (TM1) and TM7. Molecular dynamics simulations and mutagenesis uncover a polar interaction network linking orthosteric and allosteric sites through conserved residues including Asp66 2.50 , Asn104 3.36 , and Asn362 7.45 , and disrupting this network enhances allosteric cooperativity. PSB-16671 stabilizes a receptor conformation with pronounced TM6 displacement that favors G i coupling while disfavoring β-arrestin recruitment, sustaining macrophage phagocytosis of cancer cells without the desensitization induced by balanced agonists. Sequence analysis suggests that receptor-specific helix 8–proximate allosteric sites may be broadly targetable across class A GPCRs. These findings establish mechanistic principles for biased allosteric modulation applicable beyond GPR84.